Mai, Uyen, Erfan Sayyari, and Siavash Mirarab. Minimum Variance Rooting of Phylogenetic Trees and Implications for Species Tree Reconstruction. Edited by Gabriel Moreno-Hagelsieb. PLOS ONE 12, no. 8 (2017): e0182238.
Mai, U., Mirarab, S. TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees. BMC Genomics 19, 272 (2018). https://doi.org/10.1186/s12864-018-4620-2.
Balaban M, Moshiri N, Mai U, Jia X, Mirarab S (2019) TreeCluster: Clustering biological sequences using phylogenetic trees. PLOS ONE 14(8): e0221068. https://doi.org/10.1371/journal.pone.0221068
Zhu, Q., Mai, U., Pfeiffer, W. et al. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun 10, 5477 (2019). https://doi.org/10.1038/s41467-019-13443-4
Uyen Mai, Siavash Mirarab, Log Transformation Improves Dating of Phylogenies, Molecular Biology and Evolution, msaa222, https://doi.org/10.1093/molbev/msaa222
Gene exchange networks define species-like units in marine prokaryotes R. Stepanauskas, J.M. Brown, U. Mai, O. Bezuidt, M. Pachiadaki, J. Brown, S.J. Biller, P.M. Berube, N.R. Record, S. Mirarab bioRxiv 2020.09.10.291518; doi: https://doi.org/10.1101/2020.09.10.291518
Talk at University of Illinois at Chicago, Chicago IL, USA
Talk at University of Montpellier, Montpellier, France
Talk at University of Florida, Gainesville FL, USA
Talk at Virtual meeting, Zoom